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Journal club 2014

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  • García-Oliver E, Pascual-García P, García-Molinero V, Lenstra TL, Holstege FC, Rodríguez-Navarro S.(2013) A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA. Nucleic Acids Res. 41(11), 5655-68.

  • Chawla A, Chakrabarti S, Ghosh G, Niwa M. (2011) Attenuation of yeast UPR is essential for survival and is mediated by IRE1 kinase. J Cell Biol. 193(1), 41-50. 

  • Yang X, Shen Y, Garre E, Hao X, Krumlinde D, Cvijović M, Arens C, Nyström T, Liu B, Sunnerhagen P. (2014) Stress granule-defective mutants deregulate stress responsive transcripts. PLoS Genet. 10(11), e1004763. 

  • Markgraf DF, Klemm RW, Junker M, Hannibal-Bach HK, Ejsing CS, Rapoport TA.(2014) An ER protein functionally couples neutral lipid metabolism on lipid droplets to membrane lipid synthesis in the ER. Cell Rep. 6(1), 44-55. 

  • Weidner J, Wang C, Prescianotto-Baschong C, Estrada AF, Spang A. (2014) The polysome-associated proteins Scp160 and Bfr1 prevent P body formation under normal growth conditions. J Cell Sci. 127(Pt 9), 1992-2004. 

  • Bregman A, Avraham-Kelbert M, Barkai O, Duek L, Guterman A, Choder M. (2011) Promoter elements regulate cytoplasmic mRNA decay. Cell., 147(7), 1473-83.

  • Weids AJ, Grant CM. (2014) The yeast peroxiredoxin Tsa1 protects against protein-aggregate-induced oxidative stress. J Cell Sci. 127(Pt 6), 1327-35.

  • Senissar M, Le Saux A, Belgareh-Touzé N, Adam C, Banroques J, Tanner NK. (2014) The DEAD-box helicase Ded1 from yeast is an mRNP cap-associated protein that shuttles between the cytoplasm and nucleus. Nucleic Acids Res., 42(15), 10005-22.

  • Pracheil T, Thornton J, Liu Z. (2012) TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae. Genetics. 190(4), 1325-39

  • Surma MA, Klose C, Peng D, Shales M, Mrejen C, Stefanko A, Braberg H, Gordon DE, Vorkel D, Ejsing CS, Farese R Jr, Simons K, Krogan NJ, Ernst R. (2013) A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress. Mol Cell., 51(4), 519-30.

  • Azad GK, Singh V, Mandal P, Singh P, Golla U, Baranwal S, Chauhan S, Tomar RS. (2014) Ebselen induces reactive oxygen species (ROS)-mediated cytotoxicity in Saccharomyces cerevisiae with inhibition of glutamate dehydrogenase being a target FEBS Open Bio. 4, 77-89.

  • Zid BM, O'Shea EK. Promoter sequences direct cytoplasmic localization and translation of mRNAs during starvation in yeast. (2014) Nature. 514(7520), 117-21.

  • Mao K, Wang K, Liu X, Klionsky DJ. (2013) The scaffold protein Atg11 recruits fission machinery to drive selective mitochondria degradation by autophagy. Dev Cell., 26(1), 9-18.

  • Blamowska M, Neupert W, Hell K. (2012) Biogenesis of the mitochondrial Hsp70 chaperone. J Cell Biol., 199(1), 123-35.

  • Weidner J, Wang C, Prescianotto-Baschong C, Estrada AF, Spang A. (2014) The polysome-associated proteins Scp160 and Bfr1 prevent P body formation under normal growth conditions. J Cell Sci., 127(Pt 9), 1992-2004.

  • Lackner LL, Ping H, Graef M, Murley A, Nunnari J. (2013) Endoplasmic reticulum-associated mitochondria-cortex tether functions in the distribution and inheritance of mitochondria. Proc Natl Acad Sci U S A., 110(6), E458-67.

  • Lang MJ, Martinez-Marquez JY, Prosser DC, Ganser LR, Buelto D, Wendland B, Duncan MC. (2014) Glucose Starvation Inhibits Autophagy via Vacuolar Hydrolysis and Induces Plasma Membrane Internalization by Down-regulating Recycling. J Biol Chem., 289(24), 16736-16747.

  • Jin C, Strich R, Cooper KF. (2014) Slt2p phosphorylation induces cyclin C nuclear-to-cytoplasmic translocation in response to oxidative stress. Mol Biol Cell., 25(8), 1396-407.

  • Dulle JE, Stein KC, True HL. (2014) Regulation of the Hsp104 middle domain activity is critical for yeast prion propagation. PLoS One., 9(1), e87521.

  • van Zutphen T, Todde V, de Boer R, Kreim M, Hofbauer HF, Wolinski H, Veenhuis M, van der Klei IJ, Kohlwein SD. (2014) Lipid droplet autophagy in the yeast Saccharomyces cerevisiae. Mol Biol Cell., 25(2), 290-301.

  • Pircher A, Bakowska-Zywicka K, Schneider L, Zywicki M, Polacek N. (2014) An mRNA-derived noncoding RNA targets and regulates the ribosome. Mol Cell., 54(1), 147-55.

  • Simpson CE, Lui J, Kershaw CJ, Sims PF, Ashe MP. (2014) mRNA localization to P-bodies in yeast is bi-phasic with many mRNAs captured in a late Bfr1p-dependent wave. J Cell Sci., 127(Pt 6), 1254-62.

  • Cooper KF, Khakhina S, Kim SK, Strich R. (2014) Stress-induced nuclear-to-cytoplasmic translocation of cyclin C promotes mitochondrial fission in yeast. Dev Cell., 28(2), 161-73.

  • Shah KH, Zhang B, Ramachandran V, Herman PK. (2013) Processing body and stress granule assembly occur by independent and differentially regulated pathways in Saccharomyces cerevisiae. Genetics., 193(1), 109-23.

  • Zhao H, Li J, Han B, Li X, Chen J. (2014) Improvement of oxidative stress tolerance in Saccharomyces cerevisiae through global transcription machinery engineering. J Ind Microbiol Biotechnol., 41(5), 869-78.

  • Takuya Inaba, Daisuke Watanabe, Yoko Yoshiyama, Koichi Tanaka, Jun Ogawa, Hiroshi Takagi, Hitomi Shimoi and Jun shima. (2013) An organic acid-tolerant HAA1-overexpression mutant of an industrial bioethanol strain of Saccharomyces cerevisiae and its application to the production of bioethanol from sugarcane molasses AMB Express., 3(1), 74.

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