Journal club 2012

 

1. Arribere JA, Doudna JA, Gilbert WV. (2011) Reconsidering movement of eukaryotic mRNAs between polysomes and P bodies. Mol Cell., 44(5), 745-58.

2. Schuck S, Prinz WA, Thorn KS, Voss C, Walter P. (2009) Membrane expansion alleviates endoplasmic reticulum stress independently of the unfolded protein response. J Cell Biol., 187(4), 525-36.

3. Roach C, Feller SE, Ward JA, Shaikh SR, Zerouga M, Stillwell W. (2004) Comparison of cis and trans fatty acid containing phosphatidylcholines on membrane properties.Biochemistry., 43(20), 6344-51.

4. Rajyaguru P, She M, Parker R. (2012) Scd6 targets eIF4G to repress translation: RGG motif proteins as a class of eIF4G-binding proteins. Mol Cell., 45(2), 244-54.

5. Li BZ, Yuan YJ. (2010) Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae. Appl Microbiol Biotechnol., 86(6), 1915-24.

6. Ferreira TC, de Moraes LM, Campos EG. (2011) Cell density-dependent linoleic acid toxicity to Saccharomyces cerevisiae. FEMS Yeast Res., 11(5), 1567-1364.

7. Kurischko C, Kim HK, Kuravi VK, Pratzka J, Luca FC. (2011) The yeast Cbk1 kinase regulates mRNA localization via the mRNA-binding protein Ssd1. J Cell Biol., 192(4), 583-98.

8. Berchtold D, Piccolis M, Chiaruttini N, Riezman I, Riezman H, Roux A, Walther TC, Loewith R. (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. Nat Cell Biol., 14(5), 542-7.

9. Jacquier N, Choudhary V, Mari M, Toulmay A, Reggiori F, Schneiter R. (2011) Lipid droplets are functionally connected to the endoplasmic reticulum in Saccharomyces cerevisiae. J Cell Sci., 124(14), 2424-37.

10. Beopoulos A, Nicaud JM, Gaillardin C. (2011) An overview of lipid metabolism in yeasts and its impact on biotechnological processes. Appl Microbiol Biotechnol., 90(4), 1193-206.

11. De Smet CH, Vittone E, Scherer M, Houweling M, Liebisch G, Brouwers JF, de Kroon AI. (2012) The yeast acyltransferase Sct1p regulates fatty acid desaturation by competing with the desaturase Ole1p. Mol Biol Cell., 23(7), 1146-56.

12. Marr N, Foglia J, Terebiznik M, Athenstaedt K, Zaremberg V. (2012) Controlling lipid fluxes at glycerol-3-phosphate acyltransferase step in yeast: unique contribution of Gat1p to oleic acid-induced lipid particle formation. J Biol Chem., 287(13), 10251-64.

13. Sweet T, Kovalak C, Coller J. (2012) The DEAD-Box Protein Dhh1 Promotes Decapping by Slowing Ribosome Movement. PLoS Biol., 10(6), e1001342.

14. Wang CW, Lee SC. (2012) The ubiquitin-like (UBX)-domain-containing protein Ubx2/ Ubxd8 regulates lipid droplet homeostasis. J Cell Sci., (in press.)

15. Takahara T, Maeda T. (2012) Transient Sequestration of TORC1 into Stress Granules during Heat Stress. Mol Cell., (in press.)

16. Tanigawa M, Kihara A, Terashima M, Takahara T, Maeda T. (2012) Sphingolipids regulate the yeast high-osmolarity glycerol response pathway. Mol Cell Biol., 32(14), 2861-70.

17. Liu ZL. (2011) Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates. Appl Microbiol Biotechnol., 90(3), 809-25.

18. Bhattacharya S, Shcherbik N, Vasilescu J, Smith JC, Figeys D, Haines DS. (2009) Identification of lysines within membrane-anchored Mga2p120 that are targets of Rsp5p ubiquitination and mediate mobilization of tethered Mga2p90. J Mol Biol., 385(3), 718-25.

19. Masek T, Valasek L, Pospisek M. (2011) Polysome analysis and RNA purification from sucrose gradients. Methods Mol Biol., 703, 293-309.

20. Moreira KE, Schuck S, Schrul B, Frohlich F, Moseley JB, Walther TC, Walter P. (2012) Seg1 controls eisosome assembly and shape.  J Cell Biol., 193(3), 405-20.

21. Garcia-Gomez JJ, Babiano R, Lebaron S, Froment C, Monsarrat B, Henry Y, de la Cruz J. (2011) Nop6, a component of 90S pre-ribosomal particles, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae. RNA Biol., 8(1), 112-24.

22. Duennwald ML, Echeverria A, Shorter J. (2012) Small heat shock proteins potentiate amyloid dissolution by protein disaggregases from yeast and humans. PLoS Biol., 10(6).

23. Gomar-Alba M, Jimenez-Marti E, Del Olmo M. (2012) The Saccharomyces cerevisiae Hot1p regulated gene YHR087W (HGI1) has a role in translation upon high glucose concentration stress. BMC Mol Biol., 13(19)

24. Tudisca V, Simpson C, Castelli L, Lui J, Hoyle N, Moreno S, Ashe M, Portela P. (2012) PKA isoforms coordinate mRNA fate during nutrient starvation. J Cell Sci., (in press.)

25. Rowe LA, Degtyareva N, Doetsch PW. (2012) Yap1: a DNA damage responder in Saccharomyces cerevisiae. Mech Ageing Dev., 133(4), 147-56.

26. Ta MT, Kapterian TS, Fei W, Du X, Brown AJ, Dawes IW, Yang H. (2012) Accumulation of squalene is associated with the clustering of lipid droplets. FEBS J., 279(22), 4231-44.

27. Rice C, Cooke M, Treloar N, Vollbrecht P, Stukey J, McDonough V. (2010) A role for MGA2, but not SPT23, in activation of transcription of ERG1 in Saccharomyces cerevisiae. Biochem Biophys Res Commun., 403(3-4).

28. Shah KH, Zhang B, Ramachandran V, Herman PK. (2012) Processing Body and Stress Granule Assembly Occur by Independent and Differentially Regulated Pathways in Saccharomyces cerevisiae. Genetics., (in press.)

29. Babour A, Bicknell AA, Tourtellotte J, Niwa M. (2010) A surveillance pathway monitors the fitness of the endoplasmic reticulum to control its inheritance. Cell, 142(2), 256-69.

30. Mitchell SF, Jain S, She M, Parker R. (2013) Global analysis of yeast mRNPs. Nat Struct Mol Biol., 20(1), 127-33.

31. Rojas M, Farr GW, Fernandez CF, Lauden L, McCormack JC, Wolin SL. (2012) Yeast Gis2 and Its Human Ortholog CNBP Are Novel Components of Stress-Induced RNP Granules. PLoS One., 7(12).

32. Gulshan K, Lee SS, Moye-Rowley WS. (2011) Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1. J Biol Chem., 286(39), 34071-81.